Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SFL89116.1 | SFL89162.1 | SAMN04487963_0425 | SAMN04487963_0427 | Dihydroorotase. | Pyrimidine operon attenuation protein / uracil phosphoribosyltransferase. | 0.995 |
SFL89116.1 | SFM17310.1 | SAMN04487963_0425 | SAMN04487963_1534 | Dihydroorotase. | Uracil permease. | 0.883 |
SFL89116.1 | SFM18760.1 | SAMN04487963_0425 | SAMN04487963_1605 | Dihydroorotase. | Dihydropyrimidinase. | 0.495 |
SFL89116.1 | carA | SAMN04487963_0425 | SAMN04487963_0102 | Dihydroorotase. | Carbamoyl-phosphate synthase small subunit; Belongs to the CarA family. | 0.928 |
SFL89116.1 | carB | SAMN04487963_0425 | SAMN04487963_0101 | Dihydroorotase. | Carbamoyl-phosphate synthase large subunit; Belongs to the CarB family. | 0.939 |
SFL89116.1 | pyrB | SAMN04487963_0425 | SAMN04487963_0426 | Dihydroorotase. | Aspartate carbamoyltransferase; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family. | 0.999 |
SFL89116.1 | pyrD | SAMN04487963_0425 | SAMN04487963_1714 | Dihydroorotase. | Dihydroorotate oxidase A; Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily. | 0.998 |
SFL89116.1 | pyrE | SAMN04487963_0425 | SAMN04487963_1067 | Dihydroorotase. | Orotate phosphoribosyltransferase; Catalyzes the transfer of a ribosyl phosphate group from 5- phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP). | 0.919 |
SFL89116.1 | pyrF | SAMN04487963_0425 | SAMN04487963_1707 | Dihydroorotase. | Orotidine-5'-phosphate decarboxylase; Catalyzes the decarboxylation of orotidine 5'-monophosphate (OMP) to uridine 5'-monophosphate (UMP); Belongs to the OMP decarboxylase family. Type 1 subfamily. | 0.910 |
SFL89162.1 | SFL89116.1 | SAMN04487963_0427 | SAMN04487963_0425 | Pyrimidine operon attenuation protein / uracil phosphoribosyltransferase. | Dihydroorotase. | 0.995 |
SFL89162.1 | SFM17310.1 | SAMN04487963_0427 | SAMN04487963_1534 | Pyrimidine operon attenuation protein / uracil phosphoribosyltransferase. | Uracil permease. | 0.961 |
SFL89162.1 | SFM18760.1 | SAMN04487963_0427 | SAMN04487963_1605 | Pyrimidine operon attenuation protein / uracil phosphoribosyltransferase. | Dihydropyrimidinase. | 0.947 |
SFL89162.1 | carA | SAMN04487963_0427 | SAMN04487963_0102 | Pyrimidine operon attenuation protein / uracil phosphoribosyltransferase. | Carbamoyl-phosphate synthase small subunit; Belongs to the CarA family. | 0.914 |
SFL89162.1 | carB | SAMN04487963_0427 | SAMN04487963_0101 | Pyrimidine operon attenuation protein / uracil phosphoribosyltransferase. | Carbamoyl-phosphate synthase large subunit; Belongs to the CarB family. | 0.935 |
SFL89162.1 | pyrB | SAMN04487963_0427 | SAMN04487963_0426 | Pyrimidine operon attenuation protein / uracil phosphoribosyltransferase. | Aspartate carbamoyltransferase; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family. | 0.998 |
SFL89162.1 | pyrD | SAMN04487963_0427 | SAMN04487963_1714 | Pyrimidine operon attenuation protein / uracil phosphoribosyltransferase. | Dihydroorotate oxidase A; Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily. | 0.889 |
SFL89162.1 | pyrE | SAMN04487963_0427 | SAMN04487963_1067 | Pyrimidine operon attenuation protein / uracil phosphoribosyltransferase. | Orotate phosphoribosyltransferase; Catalyzes the transfer of a ribosyl phosphate group from 5- phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP). | 0.960 |
SFL89162.1 | pyrF | SAMN04487963_0427 | SAMN04487963_1707 | Pyrimidine operon attenuation protein / uracil phosphoribosyltransferase. | Orotidine-5'-phosphate decarboxylase; Catalyzes the decarboxylation of orotidine 5'-monophosphate (OMP) to uridine 5'-monophosphate (UMP); Belongs to the OMP decarboxylase family. Type 1 subfamily. | 0.997 |
SFM17310.1 | SFL89116.1 | SAMN04487963_1534 | SAMN04487963_0425 | Uracil permease. | Dihydroorotase. | 0.883 |
SFM17310.1 | SFL89162.1 | SAMN04487963_1534 | SAMN04487963_0427 | Uracil permease. | Pyrimidine operon attenuation protein / uracil phosphoribosyltransferase. | 0.961 |
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