STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFM25726.1Type II secretion system protein C (GspC). (217 aa)    
Predicted Functional Partners:
SFM42762.1
General secretion pathway protein D.
 
 
 0.990
SFL84404.1
Hypothetical protein.
 
 
 0.932
SFM42740.1
Type II secretion system protein C (GspC).
  
  
 
0.931
SFM25840.1
General secretion pathway protein I.
 
  
 0.910
SFM25913.1
General secretion pathway protein L; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
 
   
 0.891
SFM25935.1
General secretion pathway protein M; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
 
   
 0.891
SFM25820.1
General secretion pathway protein H.
 
  
 0.886
SFM25861.1
General secretion pathway protein J.
 
  
 0.880
SFM25884.1
General secretion pathway protein K.
 
   
 0.850
SFM25713.1
Transglutaminase-like cysteine proteinase BTLCP.
       0.784
Your Current Organism:
Marinobacter zhejiangensis
NCBI taxonomy Id: 488535
Other names: CGMCC 1.7061, JCM 15156, M. zhejiangensis, Marinobacter sp. CN74, Marinobacter zhejiangensis Huo et al. 2008, strain CN74
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.