STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFM54542.1Tetratricopeptide repeat-containing protein. (944 aa)    
Predicted Functional Partners:
SFM54568.1
Hypothetical protein.
 
  
 0.955
SFM54611.1
Outer membrane transport energization protein ExbB.
 
  
 0.947
SFM53028.1
Beta-barrel assembly machine subunit BamC.
   
 
 0.942
SFM01603.1
NTE family protein.
  
 
 0.941
SFL83227.1
WD40-like Beta Propeller Repeat.
 
  
 0.939
SFM54636.1
Biopolymer transport protein ExbD/TolR.
 
  
 0.939
SFM54664.1
Biopolymer transport protein ExbD.
 
  
 0.939
SFM54489.1
Hypothetical protein.
 
     0.933
SFM54678.1
Hypothetical protein.
 
     0.931
bamA
Beta-barrel assembly machine subunit BamA; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
  
 
 0.914
Your Current Organism:
Marinobacter zhejiangensis
NCBI taxonomy Id: 488535
Other names: CGMCC 1.7061, JCM 15156, M. zhejiangensis, Marinobacter sp. CN74, Marinobacter zhejiangensis Huo et al. 2008, strain CN74
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.