Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| SFL89361.1 | SFM17033.1 | SAMN04487963_0436 | SAMN04487963_1520 | Type IV pilus assembly protein PilK. | Flagellar FliJ protein. | 0.448 |
| SFL89361.1 | SFM17606.1 | SAMN04487963_0436 | SAMN04487963_1547 | Type IV pilus assembly protein PilK. | Purine-binding chemotaxis protein CheW. | 0.661 |
| SFL89361.1 | SFM25278.1 | SAMN04487963_0436 | SAMN04487963_1925 | Type IV pilus assembly protein PilK. | MCP methyltransferase, CheR-type; Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP. | 0.661 |
| SFL89361.1 | SFM51961.1 | SAMN04487963_0436 | SAMN04487963_2777 | Type IV pilus assembly protein PilK. | Hypothetical protein. | 0.618 |
| SFL89361.1 | SFM61112.1 | SAMN04487963_0436 | SAMN04487963_3097 | Type IV pilus assembly protein PilK. | PilZ domain-containing protein; Binds the second messenger bis-(3'-5') cyclic dimeric guanosine monophosphate (c-di-GMP). Can bind two c-di-GMP molecules per monomer. May play a role in bacterial second-messenger regulated processes. Binding to c-di-GMP induces a conformational change of the C- and N-termini resulting in the exposure of a highly negative surface on one side of the protein to a possible effector protein. | 0.801 |
| SFM02429.1 | SFM16912.1 | SAMN04487963_1078 | SAMN04487963_1513 | HD-like signal output (HDOD) domain, no enzymatic activity. | Two-component system, sensor histidine kinase FlrB. | 0.597 |
| SFM02429.1 | SFM17033.1 | SAMN04487963_1078 | SAMN04487963_1520 | HD-like signal output (HDOD) domain, no enzymatic activity. | Flagellar FliJ protein. | 0.497 |
| SFM02429.1 | SFM17606.1 | SAMN04487963_1078 | SAMN04487963_1547 | HD-like signal output (HDOD) domain, no enzymatic activity. | Purine-binding chemotaxis protein CheW. | 0.596 |
| SFM02429.1 | SFM51961.1 | SAMN04487963_1078 | SAMN04487963_2777 | HD-like signal output (HDOD) domain, no enzymatic activity. | Hypothetical protein. | 0.580 |
| SFM02429.1 | SFM61112.1 | SAMN04487963_1078 | SAMN04487963_3097 | HD-like signal output (HDOD) domain, no enzymatic activity. | PilZ domain-containing protein; Binds the second messenger bis-(3'-5') cyclic dimeric guanosine monophosphate (c-di-GMP). Can bind two c-di-GMP molecules per monomer. May play a role in bacterial second-messenger regulated processes. Binding to c-di-GMP induces a conformational change of the C- and N-termini resulting in the exposure of a highly negative surface on one side of the protein to a possible effector protein. | 0.620 |
| SFM02429.1 | SFM61204.1 | SAMN04487963_1078 | SAMN04487963_3101 | HD-like signal output (HDOD) domain, no enzymatic activity. | DamX protein. | 0.590 |
| SFM12300.1 | SFM17033.1 | SAMN04487963_1238 | SAMN04487963_1520 | HD-like signal output (HDOD) domain, no enzymatic activity. | Flagellar FliJ protein. | 0.589 |
| SFM12300.1 | SFM51961.1 | SAMN04487963_1238 | SAMN04487963_2777 | HD-like signal output (HDOD) domain, no enzymatic activity. | Hypothetical protein. | 0.526 |
| SFM12300.1 | SFM61112.1 | SAMN04487963_1238 | SAMN04487963_3097 | HD-like signal output (HDOD) domain, no enzymatic activity. | PilZ domain-containing protein; Binds the second messenger bis-(3'-5') cyclic dimeric guanosine monophosphate (c-di-GMP). Can bind two c-di-GMP molecules per monomer. May play a role in bacterial second-messenger regulated processes. Binding to c-di-GMP induces a conformational change of the C- and N-termini resulting in the exposure of a highly negative surface on one side of the protein to a possible effector protein. | 0.620 |
| SFM12300.1 | SFM61204.1 | SAMN04487963_1238 | SAMN04487963_3101 | HD-like signal output (HDOD) domain, no enzymatic activity. | DamX protein. | 0.521 |
| SFM16912.1 | SFM02429.1 | SAMN04487963_1513 | SAMN04487963_1078 | Two-component system, sensor histidine kinase FlrB. | HD-like signal output (HDOD) domain, no enzymatic activity. | 0.597 |
| SFM16912.1 | SFM17033.1 | SAMN04487963_1513 | SAMN04487963_1520 | Two-component system, sensor histidine kinase FlrB. | Flagellar FliJ protein. | 0.631 |
| SFM16912.1 | SFM17606.1 | SAMN04487963_1513 | SAMN04487963_1547 | Two-component system, sensor histidine kinase FlrB. | Purine-binding chemotaxis protein CheW. | 0.809 |
| SFM16912.1 | SFM19462.1 | SAMN04487963_1513 | SAMN04487963_1641 | Two-component system, sensor histidine kinase FlrB. | PilZ domain-containing protein. | 0.488 |
| SFM16912.1 | SFM25278.1 | SAMN04487963_1513 | SAMN04487963_1925 | Two-component system, sensor histidine kinase FlrB. | MCP methyltransferase, CheR-type; Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP. | 0.457 |
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