STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFM74704.1Undecaprenyl-diphosphatase. (483 aa)    
Predicted Functional Partners:
rplF
LSU ribosomal protein L6P; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
    
  0.806
SFM74748.1
Diguanylate cyclase (GGDEF) domain-containing protein.
       0.788
SFM74728.1
Diguanylate cyclase (GGDEF) domain-containing protein.
       0.776
SFM25519.1
Diadenosine tetraphosphate (Ap4A) hydrolase.
   
 
 0.758
SFL97775.1
Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II.
    
 0.715
SFL97905.1
fatty-acyl-CoA synthase.
    
 0.715
SFM00453.1
Long-chain acyl-CoA synthetase.
    
 0.715
SFM14227.1
fatty-acyl-CoA synthase.
    
 0.715
SFM32768.1
fatty-acyl-CoA synthase.
    
 0.715
SFM37938.1
fatty-acyl-CoA synthase.
    
 0.715
Your Current Organism:
Marinobacter zhejiangensis
NCBI taxonomy Id: 488535
Other names: CGMCC 1.7061, JCM 15156, M. zhejiangensis, Marinobacter sp. CN74, Marinobacter zhejiangensis Huo et al. 2008, strain CN74
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