Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
KHS49664.1Conjugal transfer pilus assembly protein TraU. (341 aa)    
Predicted Functional Partners:
KHS49666.1
Conjugal transfer pilus assembly protein TraW.
 
     0.946
KHS49667.1
Type IV secretory pathway protease TraF-like protein.
 
     0.945
KHS49670.1
ATPase.
 
     0.944
KHS49673.1
Conjugal transfer pilus assembly protein TraB.
 
     0.942
KHS49659.1
Conjugative transfer pilus assembly protein TraH.
 
     0.940
KHS49660.1
Conjugal transfer pilus assembly protein TraF.
 
     0.940
KHS49662.1
Conjugal transfer mating pair stabilization protein TraN.
 
     0.940
KHS49663.1
Conjugal transfer pilus assembly protein TrbC.
 
     0.935
KHS49658.1
TraG-like protein.
 
     0.920
KHS49672.1
Thiol:disulfide interchange protein DsbC.
 
     0.855
Your Current Organism:
Novosphingobium subterraneum
NCBI taxonomy Id: 48936
Other names: ATCC 700279, CIP 105153, DSM 12447, IFO 16086, N. subterraneum, NBRC 16086, Novosphingobium subterraneae, SMCC B0478, Sphingomonas subterrae, Sphingomonas subterranea, Sphingomonas subterraneae, strain B0478
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