STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KHS49004.1Two component sigma-54 specific Fis family transcriptional regulator. (458 aa)    
Predicted Functional Partners:
KHS49005.1
Multi-sensor signal transduction histidine kinase.
 
 
  0.952
KHS48773.1
Integral membrane sensor hybrid histidine kinase; Overlaps another CDS with the same product name.
 
 0.916
KHS49006.1
Sugar transferase.
 
   
 0.887
KHS49003.1
TPR repeat-containing protein.
   
 0.874
KHS48772.1
Integral membrane sensor hybrid histidine kinase; Overlaps another CDS with the same product name.
  
 0.854
KHS46959.1
RNA polymerase factor sigma-54; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
  
 0.824
KHS46091.1
PAS/PAC sensor signal transduction histidine kinase.
  
 0.821
KHS42692.1
Multi-sensor hybrid histidine kinase.
  
 0.811
KHS42515.1
Histidine kinase.
 
 0.788
KHS42633.1
LuxR family transcriptional regulator.
  
 0.760
Your Current Organism:
Novosphingobium subterraneum
NCBI taxonomy Id: 48936
Other names: ATCC 700279, CIP 105153, DSM 12447, IFO 16086, N. subterraneum, NBRC 16086, Novosphingobium subterraneae, SMCC B0478, Sphingomonas subterrae, Sphingomonas subterranea, Sphingomonas subterraneae, strain B0478
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