STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KHS49008.1Patatin. (769 aa)    
Predicted Functional Partners:
KHS48046.1
Hypothetical protein.
  
  
  0.783
KHS48116.1
Hypothetical protein.
  
  
 0.780
KHS49026.1
XRE family transcriptional regulator.
  
     0.766
KHS45579.1
Hypothetical protein.
  
     0.762
KHS48109.1
Hypothetical protein.
 
     0.714
aas
Long-chain-fatty-acid--[acyl-carrier-protein] ligase.
    
 0.708
KHS46532.1
Hypothetical protein.
  
     0.707
KHS48982.1
TonB-like protein.
  
     0.704
KHS44380.1
Polysaccharide biosynthesis protein.
  
     0.689
KHS41632.1
Hypothetical protein.
  
     0.688
Your Current Organism:
Novosphingobium subterraneum
NCBI taxonomy Id: 48936
Other names: ATCC 700279, CIP 105153, DSM 12447, IFO 16086, N. subterraneum, NBRC 16086, Novosphingobium subterraneae, SMCC B0478, Sphingomonas subterrae, Sphingomonas subterranea, Sphingomonas subterraneae, strain B0478
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.