Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
KHS49080.1TPR repeat-containing protein. (504 aa)    
Predicted Functional Partners:
KHS46957.1
Cytochrome C family protein.
 
 0.975
ndk
Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family.
   
  0.973
KHS48772.1
Integral membrane sensor hybrid histidine kinase; Overlaps another CDS with the same product name.
   
 0.954
KHS45547.1
Peptidase S1 and S6, chymotrypsin/Hap.
 
 
 0.949
KHS49003.1
TPR repeat-containing protein.
 
 
 0.948
KHS45535.1
Guanylate cyclase.
 
 
 0.939
KHS46925.1
Peptidase S1C, Do; Belongs to the peptidase S1C family.
   
 0.934
KHS42965.1
Peptidase S1 and S6, chymotrypsin/Hap.
   
 0.934
KHS48748.1
Adenylate and Guanylate cyclase catalytic domain protein.
   
 0.926
KHS45076.1
Putative chemotaxis transducer.
    
 0.925
Your Current Organism:
Novosphingobium subterraneum
NCBI taxonomy Id: 48936
Other names: ATCC 700279, CIP 105153, DSM 12447, IFO 16086, N. subterraneum, NBRC 16086, Novosphingobium subterraneae, SMCC B0478, Sphingomonas subterrae, Sphingomonas subterranea, Sphingomonas subterraneae, strain B0478
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