Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KHS49096.1TonB-dependent receptor. (977 aa)    
Predicted Functional Partners:
KHS46543.1
TonB-dependent receptor.
  
     0.670
KHS46957.1
Cytochrome C family protein.
  
     0.593
KHS43274.1
General secretion pathway protein I.
  
     0.542
KHS48075.1
Hypothetical protein.
  
     0.539
KHS46965.1
Glycyl aminopeptidase.
  
     0.538
KHS46956.1
Ferric reductase like transmembrane component.
  
     0.530
KHS47046.1
AraC family transcriptional regulator.
  
     0.527
KHS49261.1
Hypothetical protein.
  
     0.517
KHS46899.1
General secretion pathway L.
  
     0.507
KHS43219.1
TonB-dependent receptor.
  
     0.502
Your Current Organism:
Novosphingobium subterraneum
NCBI taxonomy Id: 48936
Other names: ATCC 700279, CIP 105153, DSM 12447, IFO 16086, N. subterraneum, NBRC 16086, Novosphingobium subterraneae, SMCC B0478, Sphingomonas subterrae, Sphingomonas subterranea, Sphingomonas subterraneae, strain B0478
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