Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KHS49098.1Hypothetical protein. (175 aa)    
Predicted Functional Partners:
KHS49099.1
Hypothetical protein.
 
     0.958
KHS49100.1
Hypothetical protein.
 
     0.902
KHS49101.1
Aminoglycoside phosphotransferase.
 
     0.872
KHS42630.1
Thioesterase superfamily protein.
  
     0.710
KHS49140.1
Hypothetical protein.
  
     0.650
KHS48308.1
Beta-lactamase-like protein.
  
     0.619
KHS49205.1
Phenylacetic acid degradation-like protein.
  
     0.606
KHS48694.1
Glutathione S-transferase-like protein; Overlaps another CDS with the same product name.
  
     0.549
KHS49102.1
Hypothetical protein.
       0.529
KHS48400.1
Levansucrase; Belongs to the glycosyl hydrolase 68 family.
  
     0.506
Your Current Organism:
Novosphingobium subterraneum
NCBI taxonomy Id: 48936
Other names: ATCC 700279, CIP 105153, DSM 12447, IFO 16086, N. subterraneum, NBRC 16086, Novosphingobium subterraneae, SMCC B0478, Sphingomonas subterrae, Sphingomonas subterranea, Sphingomonas subterraneae, strain B0478
Server load: medium (44%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.