Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KHS48747.1Hypothetical protein. (453 aa)    
Predicted Functional Partners:
KHS48748.1
Adenylate and Guanylate cyclase catalytic domain protein.
    
 0.807
KHS48746.1
Hypothetical protein.
 
     0.801
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
    
 0.655
KHS49391.1
Putative flavodoxin reductase.
  
 0.535
KHS49613.1
Putative flavodoxin reductase.
  
 0.535
KHS45183.1
Putative flavodoxin reductase.
  
 0.535
KHS48749.1
Hypothetical protein.
       0.509
aas
Long-chain-fatty-acid--[acyl-carrier-protein] ligase.
   
  0.495
KHS48772.1
Integral membrane sensor hybrid histidine kinase; Overlaps another CDS with the same product name.
  
 
 0.482
KHS45576.1
Cystathionine beta-lyase.
     
  0.445
Your Current Organism:
Novosphingobium subterraneum
NCBI taxonomy Id: 48936
Other names: ATCC 700279, CIP 105153, DSM 12447, IFO 16086, N. subterraneum, NBRC 16086, Novosphingobium subterraneae, SMCC B0478, Sphingomonas subterrae, Sphingomonas subterranea, Sphingomonas subterraneae, strain B0478
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