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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KHS48850.1Signal transduction histidine kinase. (346 aa)    
Predicted Functional Partners:
KHS48851.1
Response regulator receiver protein.
 
  
 0.980
KHS46091.1
PAS/PAC sensor signal transduction histidine kinase.
 
 0.977
KHS48852.1
PAS/PAC sensor signal transduction histidine kinase.
 
  
 0.974
KHS48773.1
Integral membrane sensor hybrid histidine kinase; Overlaps another CDS with the same product name.
 
0.972
KHS42515.1
Histidine kinase.
 0.970
KHS48772.1
Integral membrane sensor hybrid histidine kinase; Overlaps another CDS with the same product name.
   
 0.969
KHS42633.1
LuxR family transcriptional regulator.
 
 0.964
KHS46090.1
Signal transduction histidine kinase with CheB and CheR activity.
 
 
 0.923
KHS46697.1
Histidine kinase.
 
 
 0.913
KHS44990.1
Signal transduction histidine kinase.
 
 
 0.900
Your Current Organism:
Novosphingobium subterraneum
NCBI taxonomy Id: 48936
Other names: ATCC 700279, CIP 105153, DSM 12447, IFO 16086, N. subterraneum, NBRC 16086, Novosphingobium subterraneae, SMCC B0478, Sphingomonas subterrae, Sphingomonas subterranea, Sphingomonas subterraneae, strain B0478
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