STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KHS48465.1PAS/PAC sensor signal transduction histidine kinase. (782 aa)    
Predicted Functional Partners:
KHS48433.1
Pyruvate dehydrogenase subunit beta; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2.
   
 0.982
KHS48773.1
Integral membrane sensor hybrid histidine kinase; Overlaps another CDS with the same product name.
 
0.963
KHS46091.1
PAS/PAC sensor signal transduction histidine kinase.
 
0.956
KHS48045.1
Response regulator receiver protein.
  
 
 0.919
KHS48468.1
Nucleotidyl transferase.
 
 
   0.904
KHS48469.1
Helicase.
 
     0.902
KHS45829.1
Multi-sensor hybrid histidine kinase.
 
 
 0.884
KHS48470.1
UvrD/REP helicase; Belongs to the helicase family. UvrD subfamily.
 
    0.878
KHS48467.1
Aminoglycoside phosphotransferase.
 
     0.874
KHS46610.1
Response regulator receiver domain-containing protein.
 
 0.847
Your Current Organism:
Novosphingobium subterraneum
NCBI taxonomy Id: 48936
Other names: ATCC 700279, CIP 105153, DSM 12447, IFO 16086, N. subterraneum, NBRC 16086, Novosphingobium subterraneae, SMCC B0478, Sphingomonas subterrae, Sphingomonas subterranea, Sphingomonas subterraneae, strain B0478
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