Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
KHS48104.1TonB-dependent receptor. (769 aa)    
Predicted Functional Partners:
KHS43855.1
TonB-dependent receptor-like protein.
  
     0.773
KHS43904.1
TonB-dependent receptor.
  
  
  0.706
KHS43219.1
TonB-dependent receptor.
  
     0.703
KHS44430.1
TonB-like protein.
  
   0.617
KHS42577.1
TonB-dependent receptor.
  
  
  0.612
KHS44082.1
TonB-dependent receptor-like protein.
  
     0.597
KHS43832.1
TonB-dependent receptor.
  
     0.582
KHS48331.1
TonB-dependent siderophore receptor.
  
    0.554
KHS48105.1
Hypothetical protein.
       0.542
KHS41690.1
Putative lipoprotein.
  
     0.542
Your Current Organism:
Novosphingobium subterraneum
NCBI taxonomy Id: 48936
Other names: ATCC 700279, CIP 105153, DSM 12447, IFO 16086, N. subterraneum, NBRC 16086, Novosphingobium subterraneae, SMCC B0478, Sphingomonas subterrae, Sphingomonas subterranea, Sphingomonas subterraneae, strain B0478
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