STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KHS48131.1SAM-dependent methyltransferase; Belongs to the methyltransferase superfamily. (294 aa)    
Predicted Functional Partners:
KHS48130.1
Threonine synthase.
       0.855
KHS48660.1
tRNA/rRNA methyltransferase; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.
 
 
   0.789
KHS48129.1
SurF1 family protein.
       0.740
KHS48132.1
Dihydroneopterin aldolase-like protein.
       0.679
KHS48136.1
Molybdopterin synthase subunit MoaE.
       0.658
KHS48135.1
Sulfur transfer protein ThiS.
  
    0.648
moaA
GTP cyclohydrolase subunit MoaA; Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate.
       0.635
KHS48133.1
Short-chain dehydrogenase/reductase SDR.
       0.634
KHS48128.1
Hypothetical protein.
       0.625
KHS48127.1
Cytochrome c oxidase subunit III.
       0.592
Your Current Organism:
Novosphingobium subterraneum
NCBI taxonomy Id: 48936
Other names: ATCC 700279, CIP 105153, DSM 12447, IFO 16086, N. subterraneum, NBRC 16086, Novosphingobium subterraneae, SMCC B0478, Sphingomonas subterrae, Sphingomonas subterranea, Sphingomonas subterraneae, strain B0478
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