Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
KHS48246.1SnoaL-like domain protein. (140 aa)    
Predicted Functional Partners:
KHS48247.1
Putative acetyltransferase.
 
     0.957
KHS48248.1
Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase.
 
     0.956
KHS48251.1
Protein tyrosine phosphatase; Belongs to the low molecular weight phosphotyrosine protein phosphatase family.
  
    0.627
KHS48249.1
Branched-chain alpha-keto acid dehydrogenase E1 component.
       0.625
KHS48250.1
Acyl carrier protein.
       0.625
lldD
L-lactate dehydrogenase.
 
      0.615
purC
Phosphoribosylaminoimidazole-succinocarboxamide synthase; Belongs to the SAICAR synthetase family.
       0.514
ilvD
Dihydroxy-acid dehydratase; Belongs to the IlvD/Edd family.
     
  0.500
KHS44481.1
Dihydroxyacid dehydratase; Belongs to the IlvD/Edd family.
     
  0.500
leuC
Isopropylmalate isomerase large subunit; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate.
     
  0.500
Your Current Organism:
Novosphingobium subterraneum
NCBI taxonomy Id: 48936
Other names: ATCC 700279, CIP 105153, DSM 12447, IFO 16086, N. subterraneum, NBRC 16086, Novosphingobium subterraneae, SMCC B0478, Sphingomonas subterrae, Sphingomonas subterranea, Sphingomonas subterraneae, strain B0478
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