STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KHS46768.1RND efflux system outer membrane lipoprotein NodT. (485 aa)    
Predicted Functional Partners:
KHS46770.1
Secretion protein HlyD.
 
 0.928
KHS44392.1
Hydrophobe/amphiphile efflux-1 protein.
 0.879
KHS44393.1
Secretion protein HlyD; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
  0.848
KHS46769.1
EmrB/QacA family drug resistance transporter; Belongs to the major facilitator superfamily.
 
    0.842
KHS43770.1
Efflux pump membrane protein.
 
 0.797
KHS41581.1
Multidrug resistance efflux pump.
 
 0.777
cusB
Copper efflux system membrane protein CusB; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
 0.761
KHS46099.1
Multidrug resistance protein A.
 
 0.721
KHS46766.1
TetR family transcriptional regulator.
 
     0.609
KHS41781.1
Type I secretion membrane fusion protein, HlyD.
  
 0.609
Your Current Organism:
Novosphingobium subterraneum
NCBI taxonomy Id: 48936
Other names: ATCC 700279, CIP 105153, DSM 12447, IFO 16086, N. subterraneum, NBRC 16086, Novosphingobium subterraneae, SMCC B0478, Sphingomonas subterrae, Sphingomonas subterranea, Sphingomonas subterraneae, strain B0478
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