STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KHS46769.1EmrB/QacA family drug resistance transporter; Belongs to the major facilitator superfamily. (518 aa)    
Predicted Functional Partners:
KHS46770.1
Secretion protein HlyD.
 
 
 0.958
KHS41581.1
Multidrug resistance efflux pump.
 
 
 0.874
KHS46099.1
Multidrug resistance protein A.
 
 
 0.872
KHS43770.1
Efflux pump membrane protein.
 
 
 0.872
KHS46768.1
RND efflux system outer membrane lipoprotein NodT.
 
    0.842
KHS46766.1
TetR family transcriptional regulator.
 
     0.603
KHS46767.1
Hypothetical protein.
       0.536
KHS44067.1
Para-aminobenzoate synthase, component I.
   
 
 0.415
Your Current Organism:
Novosphingobium subterraneum
NCBI taxonomy Id: 48936
Other names: ATCC 700279, CIP 105153, DSM 12447, IFO 16086, N. subterraneum, NBRC 16086, Novosphingobium subterraneae, SMCC B0478, Sphingomonas subterrae, Sphingomonas subterranea, Sphingomonas subterraneae, strain B0478
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