Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KHS46775.1Hypothetical protein; Belongs to the UPF0311 family. (179 aa)    
Predicted Functional Partners:
KHS49119.1
FAD dependent oxidoreductase.
 
     0.695
KHS48698.1
Amidohydrolase.
 
    0.617
KHS43910.1
Alpha/beta hydrolase family protein.
  
  
  0.602
KHS43907.1
Hypothetical protein.
  
  
  0.593
KHS46776.1
MarR family transcriptional regulator.
 
     0.590
KHS43908.1
Hypothetical protein.
  
  
  0.463
KHS43898.1
Cytochrome P450.
  
  0.456
KHS46929.1
Twin-arginine translocation pathway signal protein.
   
 
  0.409
KHS48715.1
RpsU-divergently transcribed.
   
  0.404
Your Current Organism:
Novosphingobium subterraneum
NCBI taxonomy Id: 48936
Other names: ATCC 700279, CIP 105153, DSM 12447, IFO 16086, N. subterraneum, NBRC 16086, Novosphingobium subterraneae, SMCC B0478, Sphingomonas subterrae, Sphingomonas subterranea, Sphingomonas subterraneae, strain B0478
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