Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
KHS46780.1Glycoside hydrolase. (1136 aa)    
Predicted Functional Partners:
KHS46779.1
Xylose isomerase-like TIM barrel domain-containing protein.
 
     0.850
KHS46778.1
Short chain dehydrogenase.
 
     0.803
KHS48255.1
Rhamnose-proton symporter.
  
     0.769
KHS43730.1
Phage integrase; Overlaps another CDS with the same product name.
  
    0.643
KHS46025.1
alpha-L-rhamnosidase.
  
     0.616
KHS41625.1
Esterase/lipase-like protein.
  
     0.591
nadE
NAD synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
   
  0.574
KHS48041.1
G-D-S-L lipolytic protein.
  
  0.567
KHS44960.1
Putative xylanase.
  
     0.567
KHS49201.1
Crp/Fnr family transcriptional regulator.
  
     0.549
Your Current Organism:
Novosphingobium subterraneum
NCBI taxonomy Id: 48936
Other names: ATCC 700279, CIP 105153, DSM 12447, IFO 16086, N. subterraneum, NBRC 16086, Novosphingobium subterraneae, SMCC B0478, Sphingomonas subterrae, Sphingomonas subterranea, Sphingomonas subterraneae, strain B0478
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