STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KHS45988.1Hypothetical protein. (128 aa)    
Predicted Functional Partners:
KHS45989.1
Xylose isomerase-like TIM barrel domain-containing protein.
   
   0.850
KHS45990.1
Xylose isomerase; Belongs to the hyi family.
    
  0.771
KHS44067.1
Para-aminobenzoate synthase, component I.
    
  0.542
KHS45987.1
Choline dehydrogenase.
       0.536
KHS44946.1
Oxidoreductase-like protein.
   
 
  0.452
KHS44476.1
D-galactose 1-dehydrogenase.
   
 
  0.452
KHS44421.1
Oxidoreductase-like protein.
   
 
  0.452
KHS44060.1
Oxidoreductase-like protein.
   
 
  0.452
KHS45991.1
PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase.
       0.424
KHS47788.1
PfkB.
   
 
  0.414
Your Current Organism:
Novosphingobium subterraneum
NCBI taxonomy Id: 48936
Other names: ATCC 700279, CIP 105153, DSM 12447, IFO 16086, N. subterraneum, NBRC 16086, Novosphingobium subterraneae, SMCC B0478, Sphingomonas subterrae, Sphingomonas subterranea, Sphingomonas subterraneae, strain B0478
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