Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
KHS46008.1Crp/Fnr family transcriptional regulator. (307 aa)    
Predicted Functional Partners:
KHS46007.1
Major facilitator superfamily protein.
 
     0.878
KHS44947.1
Hypothetical protein.
 
     0.837
KHS46006.1
D-tagatose 3-epimerase.
 
     0.801
KHS45045.1
Trehalose utilization.
  
     0.762
KHS46004.1
Glucose-methanol-choline oxidoreductase.
 
     0.735
KHS46005.1
Twin-arginine translocation pathway signal protein.
 
     0.735
KHS46668.1
6-phosphogluconolactonase.
  
     0.684
KHS44467.1
alpha-L-fucosidase.
  
     0.659
KHS44482.1
Endo-1,4-beta-xylanase.
  
     0.615
KHS46025.1
alpha-L-rhamnosidase.
  
  
  0.573
Your Current Organism:
Novosphingobium subterraneum
NCBI taxonomy Id: 48936
Other names: ATCC 700279, CIP 105153, DSM 12447, IFO 16086, N. subterraneum, NBRC 16086, Novosphingobium subterraneae, SMCC B0478, Sphingomonas subterrae, Sphingomonas subterranea, Sphingomonas subterraneae, strain B0478
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