STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KHS45804.1Acyltransferase. (385 aa)    
Predicted Functional Partners:
KHS49080.1
TPR repeat-containing protein.
 
     0.765
KHS49164.1
Alg9-like mannosyltransferase.
  
  
  0.763
KHS48478.1
Adhesin HecA family protein.
  
     0.758
KHS47675.1
Hypothetical protein.
  
     0.748
KHS42524.1
Hypothetical protein.
  
     0.739
KHS48313.1
Hypothetical protein.
  
  
  0.738
KHS48694.1
Glutathione S-transferase-like protein; Overlaps another CDS with the same product name.
  
     0.735
KHS43967.1
Hypothetical protein.
  
     0.707
KHS44149.1
MarR family transcriptional regulator.
  
     0.705
KHS45664.1
Hypothetical protein.
  
     0.697
Your Current Organism:
Novosphingobium subterraneum
NCBI taxonomy Id: 48936
Other names: ATCC 700279, CIP 105153, DSM 12447, IFO 16086, N. subterraneum, NBRC 16086, Novosphingobium subterraneae, SMCC B0478, Sphingomonas subterrae, Sphingomonas subterranea, Sphingomonas subterraneae, strain B0478
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.