Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
KHS45821.1Hypothetical protein. (160 aa)    
Predicted Functional Partners:
KHS45823.1
Phosphoglycerate/bisphosphoglycerate mutase; Belongs to the phosphoglycerate mutase family.
       0.844
greB
GreA/GreB family elongation factor; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreB releases sequences of up to 9 nucleotides in length.
       0.818
KHS45822.1
Hypothetical protein.
       0.782
KHS49238.1
Hypothetical protein.
  
     0.715
KHS46476.1
Sporulation-like protein.
  
     0.689
KHS43460.1
Hypothetical protein.
  
     0.682
KHS48155.1
Isoprenylcysteine carboxyl methyltransferase.
  
     0.681
KHS44295.1
Sporulation domain-containing protein.
  
     0.678
KHS48198.1
Flp pilus assembly protein TadG.
  
     0.674
KHS45621.1
Flp pilus assembly protein TadG.
  
     0.625
Your Current Organism:
Novosphingobium subterraneum
NCBI taxonomy Id: 48936
Other names: ATCC 700279, CIP 105153, DSM 12447, IFO 16086, N. subterraneum, NBRC 16086, Novosphingobium subterraneae, SMCC B0478, Sphingomonas subterrae, Sphingomonas subterranea, Sphingomonas subterraneae, strain B0478
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