Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KHS45830.1Type II restriction enzyme, methylase subunit. (917 aa)    
Predicted Functional Partners:
KHS45835.1
Hypothetical protein.
 
  
 0.961
KHS45836.1
T5orf172 domain protein.
 
  
 0.944
KHS42735.1
Hypothetical protein.
  
  
 0.873
KHS41699.1
Hypothetical protein.
  
  
 0.873
KHS45831.1
Hypothetical protein.
  
    0.826
KHS45833.1
Hypothetical protein.
       0.815
KHS45832.1
Hypothetical protein.
       0.773
KHS45834.1
Hypothetical protein.
       0.696
KHS45840.1
N-6 DNA Methylase.
  
    0.603
KHS48260.1
Hypothetical protein.
  
  
 0.440
Your Current Organism:
Novosphingobium subterraneum
NCBI taxonomy Id: 48936
Other names: ATCC 700279, CIP 105153, DSM 12447, IFO 16086, N. subterraneum, NBRC 16086, Novosphingobium subterraneae, SMCC B0478, Sphingomonas subterrae, Sphingomonas subterranea, Sphingomonas subterraneae, strain B0478
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