STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KHS45836.1T5orf172 domain protein. (392 aa)    
Predicted Functional Partners:
KHS45840.1
N-6 DNA Methylase.
  
 
 0.996
KHS41592.1
Hypothetical protein.
  
 
 0.986
KHS45835.1
Hypothetical protein.
 
  
 0.976
KHS45830.1
Type II restriction enzyme, methylase subunit.
 
    0.950
KHS49340.1
Putative endonuclease.
  
    0.779
KHS49562.1
Putative endonuclease.
  
    0.779
KHS45834.1
Hypothetical protein.
       0.778
KHS45831.1
Hypothetical protein.
  
  
 0.745
KHS45833.1
Hypothetical protein.
       0.725
KHS49424.1
Divergent AAA domain protein.
  
    0.695
Your Current Organism:
Novosphingobium subterraneum
NCBI taxonomy Id: 48936
Other names: ATCC 700279, CIP 105153, DSM 12447, IFO 16086, N. subterraneum, NBRC 16086, Novosphingobium subterraneae, SMCC B0478, Sphingomonas subterrae, Sphingomonas subterranea, Sphingomonas subterraneae, strain B0478
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.