Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KHS45836.1T5orf172 domain protein. (392 aa)    
Predicted Functional Partners:
KHS45835.1
Hypothetical protein.
 
  
 0.978
KHS45830.1
Type II restriction enzyme, methylase subunit.
 
  
 0.944
KHS45840.1
N-6 DNA Methylase.
  
  
 0.932
KHS41592.1
Hypothetical protein.
  
  
 0.819
KHS45831.1
Hypothetical protein.
  
  
 0.784
KHS45834.1
Hypothetical protein.
       0.779
KHS45833.1
Hypothetical protein.
       0.729
KHS45832.1
Hypothetical protein.
       0.668
KHS48260.1
Hypothetical protein.
  
  
 0.482
Your Current Organism:
Novosphingobium subterraneum
NCBI taxonomy Id: 48936
Other names: ATCC 700279, CIP 105153, DSM 12447, IFO 16086, N. subterraneum, NBRC 16086, Novosphingobium subterraneae, SMCC B0478, Sphingomonas subterrae, Sphingomonas subterranea, Sphingomonas subterraneae, strain B0478
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