Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
KHS45863.1Hypothetical protein. (170 aa)    
Predicted Functional Partners:
pufM
Reaction center protein M chain; The reaction center is a membrane-bound complex that mediates the initial photochemical event in the electron transfer process of photosynthesis.
   
 
 0.798
pufL
Reaction center protein L chain; Belongs to the reaction center PufL/M/PsbA/D family.
   
 
 0.798
pufC
Photosynthetic reaction center cytochrome c subunit precursor; The reaction center of purple bacteria contains a tightly bound cytochrome molecule which re-reduces the photo oxidized primary electron donor.
   
 
 0.793
KHS44027.1
Light-harvesting protein B-880 alpha chain; Antenna complexes are light-harvesting systems, which transfer the excitation energy to the reaction centers.
   
 
 0.747
pufB
Light-harvesting protein B-870 beta chain; Antenna complexes are light-harvesting systems, which transfer the excitation energy to the reaction centers.
    
 
 0.737
KHS44001.1
Hypothetical protein.
   
    0.666
KHS47051.1
Bacterioferritin; Iron-storage protein, whose ferroxidase center binds Fe(2+) ions, oxidizes them by dioxygen to Fe(3+), and participates in the subsequent Fe(3+) oxide mineral core formation within the central cavity of the protein complex; Belongs to the bacterioferritin family.
   
  
 0.641
KHS45862.1
Fumarate reductase/succinate dehydrogenase flavoprotein-like protein.
       0.497
KHS45861.1
Rieske (2Fe-2S) domain-containing protein.
       0.422
KHS46563.1
CsbD-like protein; Belongs to the UPF0337 (CsbD) family.
  
  
 0.420
Your Current Organism:
Novosphingobium subterraneum
NCBI taxonomy Id: 48936
Other names: ATCC 700279, CIP 105153, DSM 12447, IFO 16086, N. subterraneum, NBRC 16086, Novosphingobium subterraneae, SMCC B0478, Sphingomonas subterrae, Sphingomonas subterranea, Sphingomonas subterraneae, strain B0478
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