Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
vgbVirginiamycin B lyase. (308 aa)    
Predicted Functional Partners:
KHS45867.1
Putative allophanate hydrolase subunit 2/urea carboxylase.
 
     0.841
KHS45870.1
CopG family transcriptional regulator.
 
     0.801
KHS45868.1
Hypothetical protein.
 
     0.791
KHS45866.1
Putative amidase.
 
     0.788
KHS45869.1
Hypothetical protein.
 
     0.786
KHS45872.1
Binding-protein-dependent transport systems inner membrane component.
 
     0.779
KHS49055.1
Twin-arginine translocation pathway signal protein.
  
     0.772
KHS45874.1
Sterol desaturase-like protein.
 
     0.772
KHS49180.1
SnoaL-like domain protein.
  
     0.729
KHS45871.1
ABC-type transport system ATPase component.
       0.713
Your Current Organism:
Novosphingobium subterraneum
NCBI taxonomy Id: 48936
Other names: ATCC 700279, CIP 105153, DSM 12447, IFO 16086, N. subterraneum, NBRC 16086, Novosphingobium subterraneae, SMCC B0478, Sphingomonas subterrae, Sphingomonas subterranea, Sphingomonas subterraneae, strain B0478
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