STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KHS45870.1CopG family transcriptional regulator. (157 aa)    
Predicted Functional Partners:
KHS45867.1
Putative allophanate hydrolase subunit 2/urea carboxylase.
 
     0.881
KHS45866.1
Putative amidase.
 
     0.874
KHS45869.1
Hypothetical protein.
 
     0.869
KHS45868.1
Hypothetical protein.
 
     0.862
KHS45871.1
ABC-type transport system ATPase component.
 
     0.857
KHS45872.1
Binding-protein-dependent transport systems inner membrane component.
 
     0.842
KHS45873.1
ABC transporter periplasmic substrate-binding protein.
 
     0.815
vgb
Virginiamycin B lyase.
 
     0.805
KHS46809.1
Pyruvate flavodoxin/ferredoxin oxidoreductase-like protein.
     
 0.701
KHS45874.1
Sterol desaturase-like protein.
 
     0.518
Your Current Organism:
Novosphingobium subterraneum
NCBI taxonomy Id: 48936
Other names: ATCC 700279, CIP 105153, DSM 12447, IFO 16086, N. subterraneum, NBRC 16086, Novosphingobium subterraneae, SMCC B0478, Sphingomonas subterrae, Sphingomonas subterranea, Sphingomonas subterraneae, strain B0478
Server load: low (20%) [HD]