Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
KHS45871.1ABC-type transport system ATPase component. (252 aa)    
Predicted Functional Partners:
KHS45872.1
Binding-protein-dependent transport systems inner membrane component.
 
 0.997
KHS45873.1
ABC transporter periplasmic substrate-binding protein.
 
 0.993
KHS41688.1
Sulfonate/nitrate/taurine transport system permease.
 
 0.973
KHS45867.1
Putative allophanate hydrolase subunit 2/urea carboxylase.
 
   
 0.957
KHS41687.1
Histidine kinase.
 
 0.955
KHS41686.1
Nitrate transporter component, nrtA.
 0.954
KHS45866.1
Putative amidase.
 
   
 0.947
KHS45869.1
Hypothetical protein.
 
   
 0.938
KHS45868.1
Hypothetical protein.
 
   
 0.935
KHS45870.1
CopG family transcriptional regulator.
 
     0.840
Your Current Organism:
Novosphingobium subterraneum
NCBI taxonomy Id: 48936
Other names: ATCC 700279, CIP 105153, DSM 12447, IFO 16086, N. subterraneum, NBRC 16086, Novosphingobium subterraneae, SMCC B0478, Sphingomonas subterrae, Sphingomonas subterranea, Sphingomonas subterraneae, strain B0478
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