STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KHS45879.1Choline dehydrogenase. (544 aa)    
Predicted Functional Partners:
KHS46809.1
Pyruvate flavodoxin/ferredoxin oxidoreductase-like protein.
     
  0.685
KHS45878.1
Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
  
 
  0.627
KHS46506.1
Hypothetical protein.
    
  0.566
KHS45880.1
acyl-CoA synthetase.
    
  0.565
KHS45877.1
Hypothetical protein.
       0.559
KHS48249.1
Branched-chain alpha-keto acid dehydrogenase E1 component.
   
 
  0.504
KHS49391.1
Putative flavodoxin reductase.
    
 0.497
KHS49613.1
Putative flavodoxin reductase.
    
 0.497
KHS45183.1
Putative flavodoxin reductase.
    
 0.497
KHS48433.1
Pyruvate dehydrogenase subunit beta; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2.
   
 
  0.490
Your Current Organism:
Novosphingobium subterraneum
NCBI taxonomy Id: 48936
Other names: ATCC 700279, CIP 105153, DSM 12447, IFO 16086, N. subterraneum, NBRC 16086, Novosphingobium subterraneae, SMCC B0478, Sphingomonas subterrae, Sphingomonas subterranea, Sphingomonas subterraneae, strain B0478
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