STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KHS45884.13-hydroxyacyl-CoA dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (300 aa)    
Predicted Functional Partners:
KHS42657.1
3-hydroxyacyl-CoA dehydrogenase.
  
 0.950
KHS42268.1
Short-chain dehydrogenase/reductase SDR.
 
 
 
0.907
KHS49391.1
Putative flavodoxin reductase.
  
 0.885
KHS49613.1
Putative flavodoxin reductase.
  
 0.885
KHS45183.1
Putative flavodoxin reductase.
  
 0.885
fadA
acetyl-CoA acyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
 
 0.864
KHS46809.1
Pyruvate flavodoxin/ferredoxin oxidoreductase-like protein.
    
 0.842
KHS45039.1
Catalase; Serves to protect cells from the toxic effects of hydrogen peroxide.
   
 0.841
KHS42730.1
Catalase; Serves to protect cells from the toxic effects of hydrogen peroxide.
   
 0.841
KHS46554.1
3-oxoacyl-[acyl-carrier-protein] synthase II; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP.
 
 0.838
Your Current Organism:
Novosphingobium subterraneum
NCBI taxonomy Id: 48936
Other names: ATCC 700279, CIP 105153, DSM 12447, IFO 16086, N. subterraneum, NBRC 16086, Novosphingobium subterraneae, SMCC B0478, Sphingomonas subterrae, Sphingomonas subterranea, Sphingomonas subterraneae, strain B0478
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