Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
KHS45891.1N-acyl-L-homoserine lactone synthase. (204 aa)    
Predicted Functional Partners:
luxR_1
LuxR-family transcriptional regulator.
 
 
 0.911
luxR_2
LuxR-family transcriptional regulator.
 
 
 0.826
KHS45892.1
phytanoyl-CoA dioxygenase.
 
     0.821
KHS45251.1
LuxR family transcriptional regulator.
 
 
 0.810
KHS44454.1
Regulatory protein LuxR.
 
 
 0.790
KHS45893.1
Hypothetical protein.
 
     0.731
KHS44997.1
Regulatory protein LuxR.
 
 
 0.696
KHS45895.1
Putative lytic transglycosylase.
  
    0.660
KHS45894.1
Conjugal transfer protein TraF.
       0.653
KHS45896.1
Hypothetical protein.
       0.489
Your Current Organism:
Novosphingobium subterraneum
NCBI taxonomy Id: 48936
Other names: ATCC 700279, CIP 105153, DSM 12447, IFO 16086, N. subterraneum, NBRC 16086, Novosphingobium subterraneae, SMCC B0478, Sphingomonas subterrae, Sphingomonas subterranea, Sphingomonas subterraneae, strain B0478
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