STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KHS45891.1N-acyl-L-homoserine lactone synthase. (204 aa)    
Predicted Functional Partners:
luxR_1
LuxR-family transcriptional regulator.
 
 
 0.910
KHS44454.1
Regulatory protein LuxR.
 
 
 0.902
KHS44997.1
Regulatory protein LuxR.
 
 
 0.859
luxR_2
LuxR-family transcriptional regulator.
 
 
 0.823
KHS45892.1
phytanoyl-CoA dioxygenase.
 
     0.820
KHS45251.1
LuxR family transcriptional regulator.
 
 
 0.806
KHS45893.1
Hypothetical protein.
 
     0.731
KHS45895.1
Putative lytic transglycosylase.
  
    0.658
KHS45894.1
Conjugal transfer protein TraF.
       0.653
KHS48483.1
Diguanylate cyclase/phosphodiesterase.
    
  0.489
Your Current Organism:
Novosphingobium subterraneum
NCBI taxonomy Id: 48936
Other names: ATCC 700279, CIP 105153, DSM 12447, IFO 16086, N. subterraneum, NBRC 16086, Novosphingobium subterraneae, SMCC B0478, Sphingomonas subterrae, Sphingomonas subterranea, Sphingomonas subterraneae, strain B0478
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