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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KHS45892.1phytanoyl-CoA dioxygenase. (291 aa)    
Predicted Functional Partners:
KHS45891.1
N-acyl-L-homoserine lactone synthase.
 
     0.820
KHS45893.1
Hypothetical protein.
 
     0.729
KHS45894.1
Conjugal transfer protein TraF.
       0.671
KHS45895.1
Putative lytic transglycosylase.
       0.671
luxR_1
LuxR-family transcriptional regulator.
 
     0.597
KHS46063.1
Ethyl tert-butyl ether degradation EthD.
  
     0.577
KHS45896.1
Hypothetical protein.
       0.502
KHS49064.1
Aminoglycoside phosphotransferase.
  
    0.467
KHS42729.1
PRC-barrel protein.
  
     0.454
KHS45200.1
PepSY-associated TM helix family protein; Overlaps another CDS with the same product name.
  
     0.443
Your Current Organism:
Novosphingobium subterraneum
NCBI taxonomy Id: 48936
Other names: ATCC 700279, CIP 105153, DSM 12447, IFO 16086, N. subterraneum, NBRC 16086, Novosphingobium subterraneae, SMCC B0478, Sphingomonas subterrae, Sphingomonas subterranea, Sphingomonas subterraneae, strain B0478
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