STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KHS45921.1Conjugal transfer protein TrbL. (435 aa)    
Predicted Functional Partners:
KHS45922.1
Conjugal transfer protein TrbF.
 
  
 0.992
KHS45923.1
Conjugal transfer protein TrbG.
 
  
 0.992
KHS45924.1
Conjugation TrbI family protein.
 
  
 0.992
KHS45920.1
Conjugal transfer protein TrbJ.
 
  
 0.982
KHS45917.1
Conjugal transfer protein TrbC.
 
  
 0.981
KHS45918.1
Conjugal transfer protein TrbD.
 
  
 0.981
KHS45919.1
Conjugal transfer protein TrbE.
 
  
 0.979
KHS45916.1
Conjugal transfer protein TrbB.
 
  
 0.977
KHS45925.1
Hypothetical protein.
 
     0.923
KHS45915.1
CopG/DNA-binding domain-containing protein.
 
     0.902
Your Current Organism:
Novosphingobium subterraneum
NCBI taxonomy Id: 48936
Other names: ATCC 700279, CIP 105153, DSM 12447, IFO 16086, N. subterraneum, NBRC 16086, Novosphingobium subterraneae, SMCC B0478, Sphingomonas subterrae, Sphingomonas subterranea, Sphingomonas subterraneae, strain B0478
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