STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KHS45557.1Putative aromatic ring hydroxylating dioxygenase subunit beta. (130 aa)    
Predicted Functional Partners:
KHS45556.1
IclR family transcriptional regulator.
 
     0.839
KHS45555.1
Twin-arginine translocation pathway signal protein.
 
     0.828
KHS45558.1
Methionine synthase, vitamin-B12 independent.
       0.824
KHS47023.1
Major facilitator transporter.
  
     0.703
KHS44941.1
Hypothetical protein.
  
     0.634
KHS46506.1
Hypothetical protein.
  
     0.630
KHS41623.1
Hypothetical protein.
  
     0.623
KHS44942.1
Xylose isomerase-like TIM barrel domain-containing protein.
  
     0.579
KHS41622.1
Xylose isomerase-like TIM barrel domain-containing protein.
  
     0.576
KHS46570.1
Permease.
  
     0.569
Your Current Organism:
Novosphingobium subterraneum
NCBI taxonomy Id: 48936
Other names: ATCC 700279, CIP 105153, DSM 12447, IFO 16086, N. subterraneum, NBRC 16086, Novosphingobium subterraneae, SMCC B0478, Sphingomonas subterrae, Sphingomonas subterranea, Sphingomonas subterraneae, strain B0478
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