Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KHS45215.1Hypothetical protein. (90 aa)    
Predicted Functional Partners:
rpoE
ECF-type sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
       0.780
KHS45214.1
Heavy metal resistance protein.
       0.774
copB_2
Copper resistance protein CopB.
       0.580
KHS45212.1
Putative multicopper oxidase.
       0.580
copC
Copper resistance protein CopC.
       0.532
copD
Copper resistance protein CopD.
       0.532
ubiE
Ubiquinone/menaquinone biosynthesis methyltransferase.
       0.456
KHS45210.1
Hypothetical protein.
       0.417
Your Current Organism:
Novosphingobium subterraneum
NCBI taxonomy Id: 48936
Other names: ATCC 700279, CIP 105153, DSM 12447, IFO 16086, N. subterraneum, NBRC 16086, Novosphingobium subterraneae, SMCC B0478, Sphingomonas subterrae, Sphingomonas subterranea, Sphingomonas subterraneae, strain B0478
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