STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
copA_4Cation transport ATPase. (785 aa)    
Predicted Functional Partners:
KHS45140.1
CDF-family cation efflux system protein.
  
 
 0.797
KHS45221.1
Hypothetical protein.
       0.778
KHS45220.1
MerR family transcriptional regulator.
  
  
 0.777
KHS45161.1
Heavy metal translocating P-type ATPase.
 
 
0.641
KHS45162.1
Heavy metal transport/detoxification protein.
  
 
 0.627
KHS49480.1
Heavy metal transport/detoxification protein.
  
 
 0.616
ubiE
Ubiquinone/menaquinone biosynthesis methyltransferase.
       0.516
ackA
Acetate kinase; Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction; Belongs to the acetokinase family.
  
    0.479
KHS45223.1
Phosphate butyryltransferase.
  
    0.478
KHS45222.1
Poly-beta-hydroxybutyrate polymerase.
       0.469
Your Current Organism:
Novosphingobium subterraneum
NCBI taxonomy Id: 48936
Other names: ATCC 700279, CIP 105153, DSM 12447, IFO 16086, N. subterraneum, NBRC 16086, Novosphingobium subterraneae, SMCC B0478, Sphingomonas subterrae, Sphingomonas subterranea, Sphingomonas subterraneae, strain B0478
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