STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
kdgK2-dehydro-3-deoxygluconokinase. (294 aa)    
Predicted Functional Partners:
KHS45590.1
2-keto-3-deoxy-phosphogluconate aldolase.
 
 
 0.949
KHS44966.1
Mandelate racemase/muconate lactonizing protein.
 
  
 0.931
KHS44447.1
Altronate dehydratase.
 
  
 0.915
KHS47836.1
Ribulose-5-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family.
  
 0.882
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
  
 
 0.835
edd
Phosphogluconate dehydratase; Catalyzes the dehydration of 6-phospho-D-gluconate to 2- dehydro-3-deoxy-6-phospho-D-gluconate; Belongs to the IlvD/Edd family.
    
 0.802
KHS44967.1
Hypothetical protein.
 
     0.799
KHS44080.1
Mannose-1-phosphate guanylyltransferase.
    
 0.799
dgoAa
2-dehydro-3-deoxyphosphogalactonate aldolase.
 
 
 0.796
KHS44957.1
Mandelate racemase/muconate lactonizing protein.
 
  
 0.793
Your Current Organism:
Novosphingobium subterraneum
NCBI taxonomy Id: 48936
Other names: ATCC 700279, CIP 105153, DSM 12447, IFO 16086, N. subterraneum, NBRC 16086, Novosphingobium subterraneae, SMCC B0478, Sphingomonas subterrae, Sphingomonas subterranea, Sphingomonas subterraneae, strain B0478
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