STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KHS45015.1Arylmalonate decarboxylase. (248 aa)    
Predicted Functional Partners:
KHS45026.1
Isochorismatase hydrolase.
 
  
 0.938
KHS45016.1
Monooxygenase FAD-binding protein.
 
   
 0.905
sdhA
Succinate dehydrogenase flavoprotein subunit; Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily.
   
 
  0.794
KHS48362.1
Aspartate racemase.
     
 0.725
KHS45033.1
Alpha/beta hydrolase family protein.
  
     0.705
KHS47757.1
5-oxoprolinase.
 
   
 0.675
KHS45989.1
Xylose isomerase-like TIM barrel domain-containing protein.
  
     0.628
KHS45017.1
Beta-lactamase.
 
     0.622
KHS43990.1
Xylose isomerase-like TIM barrel.
  
     0.621
KHS49014.1
Isochorismatase hydrolase.
 
  
  0.615
Your Current Organism:
Novosphingobium subterraneum
NCBI taxonomy Id: 48936
Other names: ATCC 700279, CIP 105153, DSM 12447, IFO 16086, N. subterraneum, NBRC 16086, Novosphingobium subterraneae, SMCC B0478, Sphingomonas subterrae, Sphingomonas subterranea, Sphingomonas subterraneae, strain B0478
Server load: low (14%) [HD]