Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
KHS44445.1Ribose-5-phosphate isomerase. (212 aa)    
Predicted Functional Partners:
KHS44443.1
PfkB domain-containing protein.
 
  
 0.895
KHS44444.1
2-deoxy-D-gluconate 3-dehydrogenase.
 
  
  0.840
KHS44442.1
Carboxylesterase; Belongs to the type-B carboxylesterase/lipase family.
 
     0.750
KHS44446.1
LacI family transcriptional regulator.
 
  
  0.677
KHS44447.1
Altronate dehydratase.
 
  
 0.676
KHS46809.1
Pyruvate flavodoxin/ferredoxin oxidoreductase-like protein.
    
 0.640
KHS44448.1
2-keto-4-pentenoate hydratase.
 
     0.608
KHS48249.1
Branched-chain alpha-keto acid dehydrogenase E1 component.
  
 
 0.602
KHS47836.1
Ribulose-5-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family.
  
 
 0.602
KHS48501.1
Transketolase; Belongs to the transketolase family.
    
 0.589
Your Current Organism:
Novosphingobium subterraneum
NCBI taxonomy Id: 48936
Other names: ATCC 700279, CIP 105153, DSM 12447, IFO 16086, N. subterraneum, NBRC 16086, Novosphingobium subterraneae, SMCC B0478, Sphingomonas subterrae, Sphingomonas subterranea, Sphingomonas subterraneae, strain B0478
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