Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
KHS44447.1Altronate dehydratase. (505 aa)    
Predicted Functional Partners:
KHS44443.1
PfkB domain-containing protein.
 
  
 0.975
KHS44954.1
Fructuronate reductase.
 
 0.963
kdgK
2-dehydro-3-deoxygluconokinase.
 
  
 0.924
KHS44444.1
2-deoxy-D-gluconate 3-dehydrogenase.
 
  
  0.892
uxaC
Uronate isomerase.
 
  
 0.873
KHS44957.1
Mandelate racemase/muconate lactonizing protein.
 
  
 0.766
KHS44966.1
Mandelate racemase/muconate lactonizing protein.
 
  
 0.766
KHS43788.1
2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase; Belongs to the HpcH/HpaI aldolase family.
 
 
  0.751
KHS49120.1
Ribose-5-phosphate isomerase.
     
 0.740
KHS47836.1
Ribulose-5-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family.
     
 0.740
Your Current Organism:
Novosphingobium subterraneum
NCBI taxonomy Id: 48936
Other names: ATCC 700279, CIP 105153, DSM 12447, IFO 16086, N. subterraneum, NBRC 16086, Novosphingobium subterraneae, SMCC B0478, Sphingomonas subterrae, Sphingomonas subterranea, Sphingomonas subterraneae, strain B0478
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