Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
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[Homology]
Score
KHS44454.1Regulatory protein LuxR. (279 aa)    
Predicted Functional Partners:
KHS45252.1
Autoinducer synthesis protein.
 
 
 0.806
KHS45891.1
N-acyl-L-homoserine lactone synthase.
 
 
 0.790
KHS42584.1
N-acyl-L-homoserine lactone synthase.
 
 
 0.789
KHS44455.1
TonB-dependent receptor.
       0.773
KHS46091.1
PAS/PAC sensor signal transduction histidine kinase.
     
 0.537
KHS44451.1
TetR family transcriptional regulator.
       0.535
dmfA2
N,N-dimethylformamidase beta subunit.
       0.535
dmfA1
N,N-dimethylformamidase alpha subunit.
       0.535
KHS45251.1
LuxR family transcriptional regulator.
  
 
0.516
luxR_2
LuxR-family transcriptional regulator.
  
 
0.514
Your Current Organism:
Novosphingobium subterraneum
NCBI taxonomy Id: 48936
Other names: ATCC 700279, CIP 105153, DSM 12447, IFO 16086, N. subterraneum, NBRC 16086, Novosphingobium subterraneae, SMCC B0478, Sphingomonas subterrae, Sphingomonas subterranea, Sphingomonas subterraneae, strain B0478
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