STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KHS44468.1GntR family transcriptional regulator. (246 aa)    
Predicted Functional Partners:
KHS44935.1
GntR family transcriptional regulator.
  
  
 0.768
KHS43920.1
GntR family transcriptional regulator.
  
  
 0.736
KHS46086.1
GntR family transcriptional regulator.
  
  
 0.715
KHS47754.1
GntR family transcriptional regulator.
  
  
 0.675
KHS49391.1
Putative flavodoxin reductase.
    
  0.584
KHS49613.1
Putative flavodoxin reductase.
    
  0.584
KHS45183.1
Putative flavodoxin reductase.
    
  0.584
KHS42319.1
GntR family transcriptional regulator.
  
  
 0.554
dgoK
2-dehydro-3-deoxygalactonokinase.
 
  
 0.550
KHS44477.1
Putative sugar transporter.
 
     0.532
Your Current Organism:
Novosphingobium subterraneum
NCBI taxonomy Id: 48936
Other names: ATCC 700279, CIP 105153, DSM 12447, IFO 16086, N. subterraneum, NBRC 16086, Novosphingobium subterraneae, SMCC B0478, Sphingomonas subterrae, Sphingomonas subterranea, Sphingomonas subterraneae, strain B0478
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