STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KHS44470.1Hypothetical protein. (229 aa)    
Predicted Functional Partners:
KHS44469.1
Putative endo-1,5-alpha-L-arabinanase; Belongs to the glycosyl hydrolase 43 family.
       0.768
xylA
Xylose isomerase; Belongs to the xylose isomerase family.
  
  
 0.555
xynB_2
Putative beta-xylosidase; Belongs to the glycosyl hydrolase 43 family.
      0.554
KHS44468.1
GntR family transcriptional regulator.
       0.518
xylB
Xylulokinase.
  
  
 0.514
KHS44467.1
alpha-L-fucosidase.
    
  0.413
Your Current Organism:
Novosphingobium subterraneum
NCBI taxonomy Id: 48936
Other names: ATCC 700279, CIP 105153, DSM 12447, IFO 16086, N. subterraneum, NBRC 16086, Novosphingobium subterraneae, SMCC B0478, Sphingomonas subterrae, Sphingomonas subterranea, Sphingomonas subterraneae, strain B0478
Server load: low (36%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.