STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dgoK2-dehydro-3-deoxygalactonokinase. (302 aa)    
Predicted Functional Partners:
dgoAa
2-dehydro-3-deoxyphosphogalactonate aldolase.
 
  
 0.991
KHS44476.1
D-galactose 1-dehydrogenase.
 
     0.929
KHS44477.1
Putative sugar transporter.
 
     0.873
KHS44957.1
Mandelate racemase/muconate lactonizing protein.
 
 
 0.849
KHS44966.1
Mandelate racemase/muconate lactonizing protein.
 
 
 0.849
KHS44478.1
Aldehyde dehydrogenase.
 
     0.762
KHS44481.1
Dihydroxyacid dehydratase; Belongs to the IlvD/Edd family.
 
   
 0.734
xylB
Xylulokinase.
 
   
 0.661
KHS43883.1
Putative gluconolactonase.
 
     0.620
KHS42273.1
Gluconolactonase.
 
     0.563
Your Current Organism:
Novosphingobium subterraneum
NCBI taxonomy Id: 48936
Other names: ATCC 700279, CIP 105153, DSM 12447, IFO 16086, N. subterraneum, NBRC 16086, Novosphingobium subterraneae, SMCC B0478, Sphingomonas subterrae, Sphingomonas subterranea, Sphingomonas subterraneae, strain B0478
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