STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KHS44482.1Endo-1,4-beta-xylanase. (356 aa)    
Predicted Functional Partners:
KHS43879.1
alpha-L-arabinofuranosidase.
 
  
 0.856
KHS43886.1
Alpha-glucuronidase; Belongs to the glycosyl hydrolase 67 family.
 
   
 0.846
xynB_2
Putative beta-xylosidase; Belongs to the glycosyl hydrolase 43 family.
 
  
 0.793
KHS44469.1
Putative endo-1,5-alpha-L-arabinanase; Belongs to the glycosyl hydrolase 43 family.
 
  
 0.757
KHS44356.1
Hypothetical protein.
 
     0.741
galA
Alpha-galactosidase.
  
   
 0.713
KHS44467.1
alpha-L-fucosidase.
  
     0.704
xynB_1
Xylan 1,4-beta-xylosidase; Belongs to the glycosyl hydrolase 43 family.
 
  
 0.701
KHS45049.1
Putative esterase.
 
  
 0.655
KHS46008.1
Crp/Fnr family transcriptional regulator.
  
     0.615
Your Current Organism:
Novosphingobium subterraneum
NCBI taxonomy Id: 48936
Other names: ATCC 700279, CIP 105153, DSM 12447, IFO 16086, N. subterraneum, NBRC 16086, Novosphingobium subterraneae, SMCC B0478, Sphingomonas subterrae, Sphingomonas subterranea, Sphingomonas subterraneae, strain B0478
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