Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
KHS44507.1Ornithine cyclodeaminase. (308 aa)    
Predicted Functional Partners:
KHS45859.1
Proline dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.
  
 
 0.878
KHS44504.1
Binding-protein-dependent transport systems inner membrane component.
 
     0.800
KHS44508.1
Hypothetical protein.
       0.791
KHS44505.1
Binding-protein-dependent transport systems inner membrane component.
       0.775
KHS44502.1
Haloacid dehalogenase.
       0.773
KHS44503.1
Extracellular solute-binding protein.
       0.773
KHS44506.1
Oligopeptide/dipeptide ABC transporter ATP-binding protein-like protein; Belongs to the ABC transporter superfamily.
       0.773
KHS47674.1
Malic enzyme.
     
 0.769
KHS46809.1
Pyruvate flavodoxin/ferredoxin oxidoreductase-like protein.
     
  0.746
KHS48249.1
Branched-chain alpha-keto acid dehydrogenase E1 component.
   
 
  0.713
Your Current Organism:
Novosphingobium subterraneum
NCBI taxonomy Id: 48936
Other names: ATCC 700279, CIP 105153, DSM 12447, IFO 16086, N. subterraneum, NBRC 16086, Novosphingobium subterraneae, SMCC B0478, Sphingomonas subterrae, Sphingomonas subterranea, Sphingomonas subterraneae, strain B0478
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