STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KHS44507.1Ornithine cyclodeaminase. (308 aa)    
Predicted Functional Partners:
KHS45859.1
Proline dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.
  
 
 0.891
KHS44504.1
Binding-protein-dependent transport systems inner membrane component.
 
     0.801
KHS44508.1
Hypothetical protein.
       0.791
KHS44505.1
Binding-protein-dependent transport systems inner membrane component.
       0.775
KHS44503.1
Extracellular solute-binding protein.
       0.774
KHS44502.1
Haloacid dehalogenase.
       0.773
KHS44506.1
Oligopeptide/dipeptide ABC transporter ATP-binding protein-like protein; Belongs to the ABC transporter superfamily.
       0.773
KHS44513.1
FAD dependent oxidoreductase.
 
 
 0.724
KHS44510.1
Alanine racemase.
 
   
 0.676
proC
Pyrroline-5-carboxylate reductase; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline.
   
 
 0.607
Your Current Organism:
Novosphingobium subterraneum
NCBI taxonomy Id: 48936
Other names: ATCC 700279, CIP 105153, DSM 12447, IFO 16086, N. subterraneum, NBRC 16086, Novosphingobium subterraneae, SMCC B0478, Sphingomonas subterrae, Sphingomonas subterranea, Sphingomonas subterraneae, strain B0478
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