STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KHS44542.1AsnC family transcriptional regulator. (176 aa)    
Predicted Functional Partners:
KHS44540.1
Hypothetical protein.
 
     0.808
KHS44541.1
Flavin reductase domain-containing protein.
       0.773
KHS44543.1
NADH:flavin oxidoreductase/NADH oxidase.
       0.773
KHS46715.1
AsnC family transcriptional regulator.
  
     0.771
KHS45858.1
AsnC family transcriptional regulator.
  
     0.771
KHS44539.1
NADH:flavin oxidoreductase.
       0.768
KHS44523.1
AsnC family transcriptional regulator.
  
     0.763
KHS44538.1
Short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
       0.756
KHS46809.1
Pyruvate flavodoxin/ferredoxin oxidoreductase-like protein.
    
  0.664
KHS44533.1
AsnC family transcriptional regulator; Overlaps another CDS with the same product name.
 
     0.647
Your Current Organism:
Novosphingobium subterraneum
NCBI taxonomy Id: 48936
Other names: ATCC 700279, CIP 105153, DSM 12447, IFO 16086, N. subterraneum, NBRC 16086, Novosphingobium subterraneae, SMCC B0478, Sphingomonas subterrae, Sphingomonas subterranea, Sphingomonas subterraneae, strain B0478
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.